Best Workflow automation Shopify apps in 2026 [Updated]
PickYourApp Review Team
6 min read
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Nov 23, 2025
The best Shopify workflow automation apps help merchants save time and reduce manual work across their operations. From automated order fulfillment and customer tagging to PayPal tracking syncs and inventory management, these tools handle repetitive tasks automatically. Top-rated solutions like Mechanic offer 345+ premium workflows, while specialized apps automate specific processes like multi-vendor routing, fraud monitoring, and invoice generation. Whether you need to segment customers, manage purchase orders, or sync data between systems, these automation apps streamline daily store management and let you focus on growing your business.
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#1. Auto-sync PayPal tracking info & Stripe tracking info to get funds faster & build trust with PayPal.
Synctrack, an official PayPal technical partner, automatically syncs your order tracking information to both PayPal and Stripe platforms. This integration helps you receive payments faster while building trust with PayPal. The app works seamlessly with all sales channels, including Facebook and Instagram, and supports digital orders and store pickup options. By automatically updating tracking details, Synctrack helps prevent PayPal disputes, reduces account limits, and minimizes reserve holds. Manage tracking sync for multiple stores through a single subscription, saving time and maintaining transparency. The app includes free store reviews based on PayPal standards to help minimize chargebacks and keep your business running smoothly.Install from Shopify App Store
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#2. Generate discounts, shipping, payment & validation functions. ShopTank winner at Editions 25.
Looking to replace your Shopify Scripts? SupaEasy helps merchants create custom functions for discounts, shipping, payments, and validation - without any coding knowledge. As a ShopTank winner at Editions 25, this app makes function migration simple for all Shopify stores, not just Plus merchants. Generate functions three ways: use the migrator tool, choose from presets, or let the AI assistant create exactly what you need. Simply describe your requirements, and the AI will build your custom function. Perfect for merchants who want complete checkout control while transitioning from Scripts to Functions. Whether you're upgrading existing scripts or creating new functions, SupaEasy makes checkout customization straightforward for every Shopify store owner.Install from Shopify App Store
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#3. Easy way to automate order fulfillment, customer tagging, discount functions, email marketing, etc.
Automate your Shopify store workflows with this custom automation builder. Set up order fulfillment automation, customer tagging, and email marketing triggers without coding. The app helps you auto-fulfill orders, cancel unpaid orders, and manage blacklisted customers automatically. Create automated discounts, loyalty store credits, and track fraud risk orders with automatic tags. Tag customers by total spent for VIP programs, add priority order tags, and include automated order notes. Hide out-of-stock products and auto-publish when inventory is back. Connect with Mailchimp, Slack, Twilio, WhatsApp, Google Sheets, and more. Schedule tasks with flexible delays and conditional steps. Generate checkout discounts and manage refunds, credits, and alerts using smart automation rules.Install from Shopify App Store
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#4. Auto PayPal Tracking Sync to Build your trust with PayPal, Reduce Money on Hold & get Funds Faster.
Automatically sync your Shopify tracking numbers to PayPal with Proveway's reliable tracking sync solution. This integration helps build trust with PayPal by keeping your shipping information up-to-date, reducing the likelihood of payment holds and disputes. The app syncs both current and past orders (up to 3 months) with just one click, including digital order tracking and support for over 900 courier services. By maintaining transparent shipping records, you'll activate PayPal Seller Protection on your transactions and get faster access to your funds. Plus, customers can easily track their orders through a branded tracking page, improving their shopping experience. Proveway works continuously in the background to keep your PayPal tracking information synchronized, helping maintain a healthy seller account and smoother payment processing.Install from Shopify App Store
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#5. Connect your store with Airtable. Manage your data in real time and create custom tools & workflows.
SyncBase connects your Shopify store with Airtable for real-time data management. This integration lets you manage one or multiple stores with instant 2-way sync across products, collections, orders, inventory, customers, and metafields. Create custom workflows and operations tools like PIM, OMS, Purchase Orders, or ERP systems directly in Airtable. The app offers 1-click setup with pre-made templates or full customization options. Configure your sync direction, data fields, and access complete order and customer history. Changes sync instantly between platforms, so your data stays current everywhere. Connect multiple stores to centralize your data in one Airtable base. Need something specific? The Studio team can build custom solutions tailored to your business needs. Import, export, create, and update everything from products to metaobjects with real-time synchronization.Install from Shopify App Store
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#6. The ultimate customer segmentation tool. Built by data scientists to be a marketer’s best friend.
Unlock actionable customer insights with this advanced data analytics tool created by former LinkedIn data scientists. Segments Analytics helps marketers make sense of customer data through AI-powered segmentation and analysis. Get instant access to over 50 pre-built customer segments based on RFM analysis and behavioral patterns. Seamlessly sync your customer segments across major platforms including Klaviyo, Meta, Google, TikTok, and Postscript. Discover profitable segments using natural language queries, analyze product journeys, and understand customer lifecycle patterns. As a Shopify Plus certified partner, we provide expert support to help you leverage customer data for targeted marketing campaigns - ensuring the right message reaches the right customers at the right time.Install from Shopify App Store
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#7. Seamless, automated tags for smart customer segmentation, workflows, and emails.
Automate your customer segmentation with smart tagging that responds to buyer behavior. This app helps you create targeted customer segments using multi-condition workflows, making it easy to manage different groups of shoppers. Set up automated tags that update based on customer actions, enabling personalized marketing and email communications throughout the customer lifecycle. Use Shopify Email as your central hub to coordinate marketing actions across multiple platforms, and connect with thousands of other apps through Zapier for complete workflow automation. Perfect for merchants who want to deliver tailored experiences based on customer segments and shopping patterns.Install from Shopify App Store
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#8. Print and email PDF invoices, quotes, packing slips, and receipts instantly for every store order.
Print and email professional PDF invoices, packing slips, and order documents with this comprehensive order printing solution. Customize templates with your store's branding, logo, and colors using our ready-to-use designs or create your own with custom code. The app automatically generates and sends PDF invoices to customers, reducing support inquiries. Perfect for managing bulk orders, draft orders, and point-of-sale transactions. Includes essential features like multi-currency support, B2B capabilities, VAT handling, and translations for international selling. Get reliable performance and 24/7 support to handle all your order documentation needs, whether you're a small shop or large retailer.Install from Shopify App Store
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#9. All in ONE tagging app that can act as an order tagger, product tagger, and customer tagger.
Automatically tag your products, orders, and customers with this comprehensive tagging solution. Create custom workflows using flexible matching rules and conditions that work in real-time. Whether you need to organize products for better discovery, segment customers for marketing, or manage orders efficiently, this app handles it all in one place. Choose from over 100 pre-built workflows to get started quickly, or design your own unlimited custom workflows to match your specific business requirements. The app works with both new and existing store entries, letting you apply tags to your historical data whenever needed. Combine multiple conditions using AND/OR operators to create precise tagging rules that fit your store's unique needs.Install from Shopify App Store
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#10. AI-powered returns automation app: Push exchanges, store credits & turn refunds into revenue.
EcoReturns automates returns, exchanges, refunds, and store credits using AI to help you turn returns into revenue. Stop losing profits to manual returns management and reduce return-to-origin rates with intelligent automation. The app handles RMA processing, shipping labels, pickups, and customer notifications automatically. Its configurable return portal lets you set custom policies, return reasons, and automation rules that match your business needs. Choose from built-in discounted shipping rates or connect your preferred carriers. Migrate easily from Loop Returns, Aftership, Return Prime, Parcel Panel, or ReturnGo. Integrate with carriers, 3PL, ERP, OMS, CRM, and dropship systems through API and webhooks. AI-powered tools help lower refund rates while improving customer experience and profit margins. Proactive support ensures the app meets your specific requirements for post-purchase automation.Install from Shopify App Store