Best Workflow automation Shopify apps in 2026 [Updated]
PickYourApp Review Team
6 min read
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Aug 22, 2025
The best Shopify workflow automation apps help merchants save time and reduce manual work across their operations. From automated order fulfillment and customer tagging to PayPal tracking syncs and inventory management, these tools handle repetitive tasks automatically. Top-rated solutions like Mechanic offer 345+ premium workflows, while specialized apps automate specific processes like multi-vendor routing, fraud monitoring, and invoice generation. Whether you need to segment customers, manage purchase orders, or sync data between systems, these automation apps streamline daily store management and let you focus on growing your business.
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#1. Automate customer tagging based on numerous triggers. Bulk customer tags, order tags & product tags.
Pro:Tagger simplifies how you manage tags across your Shopify store with bulk tagging capabilities for customers, products, and orders. Set up automated tagging rules that add or remove customer tags based on their purchase history, behavior, and profile details. The intuitive tag manager provides a central hub to organize all your tags efficiently. With 25+ ready-to-use automation workflows, you can quickly implement tagging strategies for both new and historical data. Whether you need to tag multiple customers at once or create sophisticated automated rules, Pro:Tagger helps you maintain organized, meaningful tags throughout your store.Install from Shopify App Store
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#2. Easy way to automate order & customer tagging, inventory, marketing emails... any workflow you need!
Simplify your Shopify operations with smart workflow automation. Set up custom flows to manage order processing, customer communications, and inventory tracking automatically. The app handles essential tasks like sending inventory alerts, processing unpaid orders, managing customer tags based on spending, and controlling stock visibility. Create automated workflows for order fulfillment, customer loyalty programs, fraud monitoring, and VIP customer management. Connect with popular services like Slack, Twilio, WhatsApp, and Xero to extend your automation capabilities. Schedule tasks, add delays, and let the system work while you focus on growing your business. Perfect for merchants who want to automate routine tasks and create custom workflows that match their unique business needs.Install from Shopify App Store
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#3. Generate discounts, shipping, payment & validation functions. ShopTank winner at Editions 25.
Looking to replace your Shopify Scripts? SupaEasy helps merchants create custom functions for discounts, shipping, payments, and validation - without any coding knowledge. As a ShopTank winner at Editions 25, this app makes function migration simple for all Shopify stores, not just Plus merchants. Generate functions three ways: use the migrator tool, choose from presets, or let the AI assistant create exactly what you need. Simply describe your requirements, and the AI will build your custom function. Perfect for merchants who want complete checkout control while transitioning from Scripts to Functions. Whether you're upgrading existing scripts or creating new functions, SupaEasy makes checkout customization straightforward for every Shopify store owner.Install from Shopify App Store
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#4. Auto PayPal Tracking Sync to Build your trust with PayPal, Reduce Money on Hold & get Funds Faster.
Automatically sync your Shopify tracking numbers to PayPal with Proveway's reliable tracking sync solution. This integration helps build trust with PayPal by keeping your shipping information up-to-date, reducing the likelihood of payment holds and disputes. The app syncs both current and past orders (up to 3 months) with just one click, including digital order tracking and support for over 900 courier services. By maintaining transparent shipping records, you'll activate PayPal Seller Protection on your transactions and get faster access to your funds. Plus, customers can easily track their orders through a branded tracking page, improving their shopping experience. Proveway works continuously in the background to keep your PayPal tracking information synchronized, helping maintain a healthy seller account and smoother payment processing.Install from Shopify App Store
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#5. Split & route orders to multiple vendors and 3PL, with multi-store order management & inventory sync
Order Fulfillment Guru is a comprehensive Order Management System (OMS) designed specifically for Shopify merchants managing multiple stores, warehouses, or vendor relationships. This solution helps you automatically split and route orders to different fulfillment locations, vendors, or 3PL partners based on customizable rules. The app enables seamless real-time syncing of products, inventory, and orders across your Shopify stores, making it ideal for dropshippers and multivendor marketplaces. You can route specific orders to ShipStation accounts, manage prepaid shipping, and handle B2B requirements like payment terms and wholesale pricing. Whether you're coordinating multiple warehouses or working with various fulfillment partners, Order Fulfillment Guru simplifies your order management workflow through automated routing and synchronized inventory control.Install from Shopify App Store
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#6. Seamless, automated tags for smart customer segmentation, workflows, and emails.
Automate your customer segmentation with smart tagging that responds to buyer behavior. This app helps you create targeted customer segments using multi-condition workflows, making it easy to manage different groups of shoppers. Set up automated tags that update based on customer actions, enabling personalized marketing and email communications throughout the customer lifecycle. Use Shopify Email as your central hub to coordinate marketing actions across multiple platforms, and connect with thousands of other apps through Zapier for complete workflow automation. Perfect for merchants who want to deliver tailored experiences based on customer segments and shopping patterns.Install from Shopify App Store
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#7. The ultimate customer segmentation tool. Built by data scientists to be a marketer’s best friend.
Unlock actionable customer insights with this advanced data analytics tool created by former LinkedIn data scientists. Segments Analytics helps marketers make sense of customer data through AI-powered segmentation and analysis. Get instant access to over 50 pre-built customer segments based on RFM analysis and behavioral patterns. Seamlessly sync your customer segments across major platforms including Klaviyo, Meta, Google, TikTok, and Postscript. Discover profitable segments using natural language queries, analyze product journeys, and understand customer lifecycle patterns. As a Shopify Plus certified partner, we provide expert support to help you leverage customer data for targeted marketing campaigns - ensuring the right message reaches the right customers at the right time.Install from Shopify App Store
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#8. Instant and 2-way sync all your store data (products/inventory/orders/metafields...) with Airtable
Sync your Shopify store data with Airtable in real-time using this two-way integration app. Connect products, inventory, orders, customers, and metafields instantly with a simple one-click setup - no coding required. Build your own custom business tools like CRM, PIM, or ERP directly in Airtable while keeping everything synchronized with your store. Import and export data, manage product information, track orders, and handle bulk updates across multiple stores from one central Airtable workspace. Perfect for merchants who want a flexible, easy-to-use solution for managing their store operations through Airtable's familiar spreadsheet interface.Install from Shopify App Store
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#9. Print and email PDF invoices, quotes, packing slips, and receipts instantly for every store order.
Print and email professional PDF invoices, packing slips, and order documents with this comprehensive order printing solution. Customize templates with your store's branding, logo, and colors using our ready-to-use designs or create your own with custom code. The app automatically generates and sends PDF invoices to customers, reducing support inquiries. Perfect for managing bulk orders, draft orders, and point-of-sale transactions. Includes essential features like multi-currency support, B2B capabilities, VAT handling, and translations for international selling. Get reliable performance and 24/7 support to handle all your order documentation needs, whether you're a small shop or large retailer.Install from Shopify App Store
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#10. All in ONE tagging app that can act as an order tagger, product tagger, and customer tagger.
Automatically tag your products, orders, and customers with this comprehensive tagging solution. Create custom workflows using flexible matching rules and conditions that work in real-time. Whether you need to organize products for better discovery, segment customers for marketing, or manage orders efficiently, this app handles it all in one place. Choose from over 100 pre-built workflows to get started quickly, or design your own unlimited custom workflows to match your specific business requirements. The app works with both new and existing store entries, letting you apply tags to your historical data whenever needed. Combine multiple conditions using AND/OR operators to create precise tagging rules that fit your store's unique needs.Install from Shopify App Store