Best Operations - Other Shopify apps in 2026 [Updated]
PickYourApp Review Team
6 min read
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Feb 04, 2026
The Best Shopify operations apps help merchants handle essential backend tasks more efficiently. From managing cash-on-delivery payments and draft orders to automating backups and exports, these tools streamline daily workflows. The collection includes solutions for returns processing, profit analytics, bulk invoice printing, and fraud prevention. Whether you need to track staff time, monitor customer sessions, or generate customs documentation, these specialized apps provide the functionality to run smoother operations and reduce manual work.
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#1. Set Cash On Delivery fees & rules. Collect Partial Payments and Verify Orders with WhatsApp OTP.
Releasit COD Fee & Partial Pay helps you manage Cash on Delivery orders by adding fees or discounts based on country, product, collection, customer group, or order value. The app includes WhatsApp OTP verification to confirm customer intent before checkout, blocking fake orders and reducing fraud and failed deliveries. You can collect partial COD payments upfront using fixed amounts or percentages, which helps lower cancellations and RTO rates. Track all payments with detailed records showing paid and due balances by date, method, and amount. Set conditional rules to enable or disable COD payment options based on your specific needs. The checkout supports multilingual text and quick setup to get started fast.Install from Shopify App Store
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#2. Powerful order printer for invoices, packing slips & pick lists. Batch print 100s of orders at once.
Print and manage orders efficiently with this comprehensive bulk order printing solution. Process hundreds of orders simultaneously through an intuitive dashboard designed for high-volume stores. Generate custom invoices, packing slips, and pick lists individually or in batches of up to 500 orders. Keep customers informed with automated PDF invoices, shipping confirmations, and order tracking details. The app lets you tag and filter orders for organized fulfillment while maintaining brand consistency through customizable document templates. Perfect for growing businesses looking to reduce errors and speed up order processing. Includes round-the-clock customer support to help you maximize productivity.Install from Shopify App Store
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#3. The app allows further customization on draft order, and add discount code
Take control of your draft orders with advanced customization options. This Draft Order Helper lets you create checkouts where customers can apply discount codes directly, eliminating manual discount calculations. Add essential details like line item properties and order notes, plus rearrange items without starting over. Prevent overselling by managing inventory levels - deduct stock quantities from draft orders with a single click. The app also helps you recover sales by converting abandoned checkouts into draft orders while maintaining all product properties and customer information. Perfect for merchants who want more flexibility in handling draft orders and need better inventory control during the checkout process. Save time and reduce errors in order management while giving customers a smoother checkout experience with discount code support.Install from Shopify App Store
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#4. One app to automate returns, exchanges, refunds, store credits, and RTOs
QuickReturns is a complete returns app that automates returns and exchanges, refunds, store credits, and RTOs for your Shopify store. Manage return requests through a fully customizable branded return portal with automated email notifications. Set up flexible return policies, customize return windows, fees, and reasons for non-returnable items. The app offers smart automation rules including auto-exchange, auto-refund, auto-approve, and auto-credits to speed up your workflow. Generate automatic return labels, sync inventory with your WMS, and send real-time notifications to customers. Recover revenue with promoted store credit options, in-store returns, and smart exchange features. Make your post-purchase operations faster and more efficient while reducing return rates and improving customer satisfaction.Install from Shopify App Store
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#5. Identify fraud and prevent chargebacks.
SEON's advanced fraud prevention system helps protect your online store from fraudulent transactions and chargebacks. Using AI and machine learning, this anti-fraud solution analyzes multiple data points in real-time, including email, phone, IP address, card information, and device data. The platform offers both pre-built eCommerce fraud rules and custom rule creation to match your specific business needs. Connect quickly to start automated fraud screening, with the ability to automatically process legitimate orders while stopping suspicious transactions. Create personalized whitelists and blacklists, and access detailed analytics to make data-driven security decisions. SEON gives you the tools to validate transactions and keep your business safe while focusing on growth.Install from Shopify App Store
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#6. Customer subscriptions, add products to your store, and handle multi-distributor ordering.
Simplify your comic shop management with this comprehensive subscription and ordering system. The app integrates seamlessly with your Shopify store, allowing customers to subscribe and pre-order comics directly from your website. Manage your inventory efficiently by quickly allocating subscriber quantities and maintaining stock for your online store and POS. Process customer invoices promptly and coordinate orders across multiple distributors through a single, user-friendly interface. The built-in admin tools help you track Initial Orders and FOC reporting, while customers can independently manage their subscription lists online. Perfect for comic retailers looking to organize their subscription service and streamline their distributor ordering process.Install from Shopify App Store
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#7. Automatic real-time backups. Easy restore, recover & undo for products, themes, full store, & more.
Keep your Shopify store protected with automatic real-time backups of all your important data. Rocket Backups lets you safely store and recover products, collections, media files, blog posts, pages, and themes. When mistakes happen - like accidental edits, deleted photos, or bulk removals - you can quickly restore any item to its previous state with just one click. Every change on your store is automatically backed up as it happens, giving you complete peace of mind. Your backups are securely encrypted and stored on SOC2 compliant servers, ensuring your data stays protected. Compare different versions of your content and restore exactly what you need, when you need it. Perfect for store owners and teams who want reliable protection against accidental changes and data loss while managing their Shopify store.Install from Shopify App Store
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#8. Commercial invoice generator that helps you quickly clear customs and sell your products overseas.
Generate accurate commercial invoices for international shipping and make customs clearance simple with Customs Buddy. This automated invoice generator ensures all required customs information is included, preventing delays at the border and keeping your customers satisfied. The app automatically creates compliant documentation for your overseas orders, eliminating manual edits and reducing errors. With features like bulk order processing and Shopify Flow integration, you can quickly process multiple shipments while maintaining brand consistency. Save time and money by automating your customs documentation process with precise, customs-ready commercial invoices.Install from Shopify App Store
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#9. Unlock eCommerce Data That Drives Profit.
Get comprehensive eCommerce analytics and profit insights with Conjura's data platform. This analytics solution centralizes your omnichannel data across Shopify, Amazon, Walmart, eBay and other marketplaces into clear, actionable dashboards. Monitor critical KPIs including CAC, LTV, and ROAS while tracking product performance at the SKU level. The platform features AI-powered reporting and forecasting to help merchandising, finance, operations and marketing teams make data-driven decisions. With one-click setup and integration with popular tools like Brightpearl, Linnworks and Cin7, you can quickly access hundreds of customizable metrics to optimize your sales channels and improve profitability. Let Conjura's expert team guide you in using data analytics to drive sustainable business growth and increased profits across all your eCommerce operations.Install from Shopify App Store
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#10. Store backups, daily backup, sync data between stores and copy products across multiple stores
AppsByB: Backup & Sync provides reliable store backups and data syncing for Shopify merchants. Regular backups protect your products and content from accidental edits or failed updates. Create scheduled backups with flexible options to choose what data to save. The app makes it easy to sync data between multiple stores, keeping products and content aligned across different environments. Copy products between stores and control what data each connected store can access. Perfect for managing multiple stores, preparing migrations, or maintaining backup copies of your store data.Install from Shopify App Store