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Best Operations - Other Shopify apps in 2026 [Updated]
PickYourApp Review Team
6 min read
•
Jun 25, 2026
The Best Shopify operations apps help merchants handle essential backend tasks more efficiently. From managing cash-on-delivery payments and draft orders to automating backups and exports, these tools streamline daily workflows. The collection includes solutions for returns processing, profit analytics, bulk invoice printing, and fraud prevention. Whether you need to track staff time, monitor customer sessions, or generate customs documentation, these specialized apps provide the functionality to run smoother operations and reduce manual work.
| Name | Rate on Shopify | Price | Free trial | Key features |
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#1. Set COD fees & rules. Collect Partial, Split & Deposit Payments. Verify COD Orders with WhatsApp OTP
Releasit COD Fee helps you manage Cash on Delivery payments by adding COD fees or discounts based on conditions like country, product, collection, customer group, or order value. The app includes WhatsApp OTP verification to confirm orders before checkout, helping you block fake COD orders, reduce fraud, and lower RTO rates and failed deliveries. Accept partial payments, split payments, or deposit payments upfront with fixed or percentage amounts. Track each payment by date, method, and amount while showing customers their paid and due balances. Set conditional rules to enable or disable COD options based on your business needs. The app supports multilingual checkout text and offers fast setup to start collecting COD payments securely. -
#2. Powerful order printer for invoices, packing slips & pick lists. Batch print 100s of orders at once.
Print and manage orders efficiently with this comprehensive bulk order printing solution. Process hundreds of orders simultaneously through an intuitive dashboard designed for high-volume stores. Generate custom invoices, packing slips, and pick lists individually or in batches of up to 500 orders. Keep customers informed with automated PDF invoices, shipping confirmations, and order tracking details. The app lets you tag and filter orders for organized fulfillment while maintaining brand consistency through customizable document templates. Perfect for growing businesses looking to reduce errors and speed up order processing. Includes round-the-clock customer support to help you maximize productivity. -
#3. Automate Return & Exchange, Refunds,RTOs.Hassle-free Returns and Exchanges with Store Credit Refund
QuickReturns is a complete returns app that automates return and exchange requests, refunds, store credits, and RTOs for your Shopify store. Manage all returns through a fully customizable branded return portal with automated email notifications. Set up flexible refund options and automation rules including auto-exchange, auto-refund, auto-approve, and auto-credits to save time. Customize return policies, fees, return windows, and reasons while marking non-returnable items. Generate automatic return labels and sync with inventory and WMS systems. Recover revenue with promoted store credit, smart exchange options, and in-store returns. Real-time notifications keep customers informed throughout the return process, making post-purchase operations faster and simpler for your business. -
#4. The app allows further customization on draft order, and add discount code
Take control of your draft orders with advanced customization options. This Draft Order Helper lets you create checkouts where customers can apply discount codes directly, eliminating manual discount calculations. Add essential details like line item properties and order notes, plus rearrange items without starting over. Prevent overselling by managing inventory levels - deduct stock quantities from draft orders with a single click. The app also helps you recover sales by converting abandoned checkouts into draft orders while maintaining all product properties and customer information. Perfect for merchants who want more flexibility in handling draft orders and need better inventory control during the checkout process. Save time and reduce errors in order management while giving customers a smoother checkout experience with discount code support. -
#5. Exportify lets you export order data in the exact file format, type, and layout you need.
Exportify helps you export order data into any file format and layout you need for systems outside Shopify. Save time by automatically formatting orders into Excel, CSV, XML, or custom delimited text files for accounting software, order management systems, or product customization workflows. The app reads and extracts custom fields from your orders, including product customization data and custom attributes on orders or line items. Build export templates using the drag-and-drop column builder with access to all order fields and auto-detected custom fields. Schedule automated SFTP delivery or trigger exports via webhook. Advanced users can apply complex filters and calculated fields through support-managed templates to get exactly the data format required by external systems. -
#6. Identify fraud and prevent chargebacks.
SEON Fraud Prevention helps protect your Shopify store from fraudulent activities, chargebacks, and financial losses. This anti-fraud technology uses real-time analysis and AI-powered machine learning to validate transactions by examining email, phone, IP address, card data, device information, and customer behavior patterns. The app connects directly to SEON's platform so you can start fighting fraud immediately. Customize fraud detection rules specific to your business needs, create whitelists and blacklists, and leverage industry-leading eCommerce fraud prevention tools. Approved orders can be automatically captured while fraudulent transactions are canceled, saving you time and reducing risk. Access data-driven insights to assess, review, and optimize your fraud prevention strategy for better customer success and business growth. -
#7. Customer subscriptions, add products to your store, and handle multi-distributor ordering.
Simplify your comic shop management with this comprehensive subscription and ordering system. The app integrates seamlessly with your Shopify store, allowing customers to subscribe and pre-order comics directly from your website. Manage your inventory efficiently by quickly allocating subscriber quantities and maintaining stock for your online store and POS. Process customer invoices promptly and coordinate orders across multiple distributors through a single, user-friendly interface. The built-in admin tools help you track Initial Orders and FOC reporting, while customers can independently manage their subscription lists online. Perfect for comic retailers looking to organize their subscription service and streamline their distributor ordering process. -
#8. Advanced workflow automations ,simple no-code, custom logic & AI flow editor
Automate your Shopify store with this no-code workflow automation builder. Create custom workflows using AI-powered flow editor to handle email alerts, unpaid orders, fraud tracking, and smart tagging. Auto tag customers by total spent, assign VIP customer tags, add priority order tags, and manage automated order notes. Apply discounts, loyalty credits, and control inventory by hiding out-of-stock products with automatic republishing. Connect with Airtable, Slack, Asana, Twilio, Klaviyo, Xero, and Google Sheets. Build Shopify Flow automations triggered by customer, order, and product field or metafield changes. Tag orders with hot products, manage blacklists, and add customer notes automatically. The intuitive workflow builder includes built-in AI and LLM access for faster automation setup. -
#9. Automatic real-time backups. Easy restore, recover & undo for products, themes, full store, & more.
Keep your Shopify store protected with automatic real-time backups of all your important data. Rocket Backups lets you safely store and recover products, collections, media files, blog posts, pages, and themes. When mistakes happen - like accidental edits, deleted photos, or bulk removals - you can quickly restore any item to its previous state with just one click. Every change on your store is automatically backed up as it happens, giving you complete peace of mind. Your backups are securely encrypted and stored on SOC2 compliant servers, ensuring your data stays protected. Compare different versions of your content and restore exactly what you need, when you need it. Perfect for store owners and teams who want reliable protection against accidental changes and data loss while managing their Shopify store. -
#10. Commercial invoice generator that helps you quickly clear customs and sell your products overseas.
Generate accurate commercial invoices for international shipping and make customs clearance simple with Customs Buddy. This automated invoice generator ensures all required customs information is included, preventing delays at the border and keeping your customers satisfied. The app automatically creates compliant documentation for your overseas orders, eliminating manual edits and reducing errors. With features like bulk order processing and Shopify Flow integration, you can quickly process multiple shipments while maintaining brand consistency. Save time and money by automating your customs documentation process with precise, customs-ready commercial invoices.